STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HQ29_09675Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)    
Predicted Functional Partners:
HQ29_03920
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.993
HQ29_03455
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.963
HQ29_02935
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.933
HQ29_07575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.933
HQ29_00810
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.877
HQ29_01885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.877
HQ29_09120
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.846
HQ29_07525
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.784
HQ29_03935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.741
groEL
Molecular chaperone GroEL; 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by autom [...]
     
 0.739
Your Current Organism:
Porphyromonas canoris
NCBI taxonomy Id: 36875
Other names: CCUG 36550, CIP 104881, JCM 16132, NCTC 12835, P. canoris, VPB 4878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.