STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
POPTR_T018600Putative glycoside hydrolase; Belongs to the glycosyl hydrolase 1 family. (519 aa)    
Predicted Functional Partners:
A9PAH0_POPTR
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
      
 0.711
A9PHL2_POPTR
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
      
 0.711
U5GAZ4_POPTR
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
      
 0.711
A0A2K1Y631
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
     
 0.654
A0A2K1Y0K7
Uncharacterized protein.
  
 
 0.558
U5GAP0_POPTR
Uncharacterized protein.
  
 
 0.558
A0A2K1XZR1
Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.
      
 0.442
A0A2K2AB02
Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.
      
 0.442
U5GDL0_POPTR
Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.
      
 0.442
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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