STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T168700Epimerase domain-containing protein. (329 aa)    
Predicted Functional Partners:
A9PC55_POPTR
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.788
A0A2K1YY55
Uncharacterized protein.
   
 0.714
A9PBK6_POPTR
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 0.714
A9P8H3_POPTR
Uncharacterized protein.
   
 0.706
A9P8N1_POPTR
Uncharacterized protein.
   
 0.706
A9P8L6_POPTR
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.698
A9PDZ4_POPTR
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.698
A9P8K6_POPTR
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.682
A9PC56_POPTR
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.682
B9IML4_POPTR
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.682
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.