STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T090800Uncharacterized protein. (321 aa)    
Predicted Functional Partners:
A0A2K1YMW0
Uncharacterized protein.
  
 
  0.544
A0A2K1X3E5
Uncharacterized protein.
  
 
  0.539
A0A2K1WR65
Uncharacterized protein.
  
  0.523
B9N1W7_POPTR
Uncharacterized protein.
  
     0.522
A0A2K2A8X0
Uncharacterized protein.
  
     0.521
A0A2K2AN76
Uncharacterized protein.
  
 
  0.519
A0A2K2AV79
Uncharacterized protein.
  
 
  0.516
A0A2K2AN80
Uncharacterized protein.
  
 
  0.514
A0A2K1ZR97
Uncharacterized protein.
  
   0.513
A0A2K1WU74
Uncharacterized protein.
  
     0.511
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.