STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T060000Amino_oxidase domain-containing protein. (488 aa)    
Predicted Functional Partners:
A0A2K1Y6P1
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.974
B9IDC9_POPTR
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.974
B9H5C8_POPTR
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.972
A0A3N7GU16
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.968
B9HVB2_POPTR
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.968
B9MYV7_POPTR
CN hydrolase domain-containing protein.
  
 
 0.933
A0A2K1Z3H6
Uncharacterized protein.
  
  
0.927
A0A2K2C414
Uncharacterized protein.
  
  
0.927
A0A2K1XJH8
Amino_oxidase domain-containing protein.
  
  
0.913
A0A3N7FTI7
Amino_oxidase domain-containing protein.
  
  
0.912
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.