POPTR_T000300 protein (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

POPTR_T000300

Uncharacterized protein; Belongs to the terpene synthase family. (589 aa)

Predicted Functional Partners:

B9MXM0_POPTR

0.493

A0A2K1YP48

0.467

A0A3N7F0S5

0.466

B9HYV7_POPTR

0.464

A0A2K1YCD7

0.456

POPTR_T062800

0.445

A0A2K2B3U3

0.442

POPTR_T132200

0.436

A0A2K1YQP5

0.429

POPTR_T169300

0.426

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1YCD7	B9MXM0_POPTR	A0A2K1YCD7	B9MXM0	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A2K1YCD7	POPTR_T000300	A0A2K1YCD7	A0A2K1RA55	Uncharacterized protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.456
A0A2K1YP48	POPTR_T000300	A0A2K1YP48	A0A2K1RA55	Uncharacterized protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.467
A0A2K1YQP5	B9MXM0_POPTR	A0A2K1YQP5	B9MXM0	Uncharacterized protein.	Uncharacterized protein.	0.434
A0A2K1YQP5	POPTR_T000300	A0A2K1YQP5	A0A2K1RA55	Uncharacterized protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.429
A0A2K2B3U3	POPTR_T000300	A0A2K2B3U3	A0A2K1RA55	Uncharacterized protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.442
A0A2K2B3U3	POPTR_T062800	A0A2K2B3U3	A0A3N7G3Y6	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A3N7F0S5	B9MXM0_POPTR	A0A3N7F0S5	B9MXM0	Tify domain-containing protein.	Uncharacterized protein.	0.411
A0A3N7F0S5	POPTR_T000300	A0A3N7F0S5	A0A2K1RA55	Tify domain-containing protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.466
A0A3N7F0S5	POPTR_T169300	A0A3N7F0S5	A0A2K1R4C7	Tify domain-containing protein.	Rx_N domain-containing protein.	0.540
B9HYV7_POPTR	POPTR_T000300	B9HYV7	A0A2K1RA55	Tify domain-containing protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.464
B9HYV7_POPTR	POPTR_T169300	B9HYV7	A0A2K1R4C7	Tify domain-containing protein.	Rx_N domain-containing protein.	0.444
B9MXM0_POPTR	A0A2K1YCD7	B9MXM0	A0A2K1YCD7	Uncharacterized protein.	Uncharacterized protein.	0.479
B9MXM0_POPTR	A0A2K1YQP5	B9MXM0	A0A2K1YQP5	Uncharacterized protein.	Uncharacterized protein.	0.434
B9MXM0_POPTR	A0A3N7F0S5	B9MXM0	A0A3N7F0S5	Uncharacterized protein.	Tify domain-containing protein.	0.411
B9MXM0_POPTR	POPTR_T000300	B9MXM0	A0A2K1RA55	Uncharacterized protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.493
B9MXM0_POPTR	POPTR_T062800	B9MXM0	A0A3N7G3Y6	Uncharacterized protein.	Uncharacterized protein.	0.417
POPTR_T000300	A0A2K1YCD7	A0A2K1RA55	A0A2K1YCD7	Uncharacterized protein; Belongs to the terpene synthase family.	Uncharacterized protein.	0.456
POPTR_T000300	A0A2K1YP48	A0A2K1RA55	A0A2K1YP48	Uncharacterized protein; Belongs to the terpene synthase family.	Uncharacterized protein.	0.467
POPTR_T000300	A0A2K1YQP5	A0A2K1RA55	A0A2K1YQP5	Uncharacterized protein; Belongs to the terpene synthase family.	Uncharacterized protein.	0.429

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About