STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1WZZ6Uncharacterized protein. (861 aa)    
Predicted Functional Partners:
B9H360_POPTR
Uncharacterized protein.
  
 
 0.992
U5GCJ3_POPTR
Uncharacterized protein.
  
 
 0.992
A0A2K1XR41
Uncharacterized protein.
    
 0.987
A0A2K2BIR9
Uncharacterized protein.
    
 0.987
A0A2K2BWM5
Not1 domain-containing protein.
    
 0.982
A0A3N7G4D5
NOT2_3_5 domain-containing protein.
   
 0.972
U5GX78_POPTR
NOT2_3_5 domain-containing protein.
   
 0.972
A0A2K1X805
Uncharacterized protein.
    
 0.952
B9H3L4_POPTR
Uncharacterized protein.
    
 0.952
A0A2K1WNS9
Uncharacterized protein.
   
 0.940
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.