STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1X8Q5CRAL-TRIO domain-containing protein. (345 aa)    
Predicted Functional Partners:
A0A2K1YX66
Glutamine amidotransferase type-1 domain-containing protein.
      
 0.711
B9HMK5_POPTR
Glutamine amidotransferase type-1 domain-containing protein.
      
 0.711
A0A2K1XMW0
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.626
A0A2K2BLL0
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 
 0.618
A0A2K1X703
Uncharacterized protein.
      
 0.617
B9H362_POPTR
ATP-dependent Clp protease proteolytic subunit.
      
 0.583
A0A3N7EHB0
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
      
 0.568
A9P953_POPTR
ATP-dependent Clp protease proteolytic subunit.
      
 0.568
A9PA38_POPTR
ATP-dependent Clp protease proteolytic subunit.
      
 0.568
A9PAS6_POPTR
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
      
 0.568
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.