STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1XRE1NTP_transf_2 domain-containing protein. (1571 aa)    
Predicted Functional Partners:
A0A3N7G778
Uncharacterized protein.
   
 
 0.735
U5FXU9_POPTR
RRM domain-containing protein.
    
 
 0.639
A0A3N7HBF0
zf-C3H1 domain-containing protein.
  
   
 0.603
A0A2K1ZC57
zf-C3H1 domain-containing protein.
  
   
 0.601
B9N1H8_POPTR
Uncharacterized protein.
     
0.588
B9HPF2_POPTR
Uncharacterized protein.
      
 0.558
B9IJM5_POPTR
Uncharacterized protein.
      
 0.557
A0A2K1ZYL8
Uncharacterized protein.
   
 
 0.553
A0A3N7GAA6
Uncharacterized protein.
   
 
 0.553
A0A3N7EM87
Uncharacterized protein.
  
 
 0.533
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.