STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1XXA6Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
B9H0P1_POPTR
Uncharacterized protein.
  
  
 0.802
B9HFE7_POPTR
Uncharacterized protein.
   
 
 0.642
A0A2K1XC28
Uncharacterized protein.
    
 0.605
A0A2K1ZFR5
Uncharacterized protein.
    
 0.590
B9I2Q7_POPTR
Uncharacterized protein.
    
 0.590
A0A2K1Z8H0
Uncharacterized protein.
  
  
 0.584
B9MYQ1_POPTR
Uncharacterized protein.
  
  
 0.580
A0A2K1Z9J4
Uncharacterized protein.
    
 0.570
B9HV18_POPTR
Uncharacterized protein.
    
 0.570
A0A2K2ABZ3
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.567
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.