Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1Y413BHLH domain-containing protein. (264 aa)    
Predicted Functional Partners:
B9HCP2_POPTR
3-ketoacyl-CoA synthase.
      
 0.511
B9H5X3_POPTR
BZIP domain-containing protein.
      
 0.484
A0A2K1X5Y8
Uncharacterized protein.
      
 0.475
U5G8J0_POPTR
Uncharacterized protein.
  
     0.473
A0A3N7FL67
OVATE domain-containing protein.
   
    0.444
B9HJY7_POPTR
OVATE domain-containing protein.
   
    0.444
A0A2K1ZAW7
NAC domain-containing protein.
  
     0.434
B9H069_POPTR
Uncharacterized protein.
  
     0.433
A0A2K1WRD9
Uncharacterized protein.
      
 0.425
A0A2K1WY17
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.425
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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