STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1Y5Y5Uncharacterized protein. (147 aa)    
Predicted Functional Partners:
B9IQ13_POPTR
Uncharacterized protein.
  
 
  0.532
B9HQ26_POPTR
OVATE domain-containing protein.
  
  0.526
POPTR_T126000
Ubiquitin-like domain-containing protein.
  
     0.515
A0A2K1YZQ9
Uncharacterized protein.
  
 
   0.511
A0A3N7F0N5
Uncharacterized protein.
  
     0.510
B9N0A5_POPTR
Phytocyanin domain-containing protein.
  
 
  0.510
B9HB65_POPTR
Uncharacterized protein.
  
 
   0.501
A0A2K1YGT3
Malectin domain-containing protein.
  
     0.495
B9H698_POPTR
Uncharacterized protein.
  
     0.495
A0A2I4KKT5
NAC family protein.
  
     0.494
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.