STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1YV50Uncharacterized protein. (115 aa)    
Predicted Functional Partners:
B9H401_POPTR
Uncharacterized protein.
   
 
 0.911
A0A2K1X1N9
Uncharacterized protein.
    
 
 0.843
A0A2K1X1R6
Uncharacterized protein.
    
 
 0.843
A9P9L5_POPTR
Uncharacterized protein.
    
 
 0.830
B9HJZ0_POPTR
Uncharacterized protein.
    
 
 0.830
A0A3N7FZP9
RTR1-type domain-containing protein.
    
 
 0.823
A0A2K1XFV1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.744
B9IFT1_POPTR
RuvB-like helicase; Belongs to the RuvB family.
   
 
 0.711
B9MTL0_POPTR
RuvB-like helicase; Belongs to the RuvB family.
   
 
 0.711
A0A2K1XZ13
TPR_REGION domain-containing protein.
    
 
 0.697
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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