STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K1ZB11Uncharacterized protein. (345 aa)    
Predicted Functional Partners:
A0A2K1XN58
Uncharacterized protein.
      
 0.614
A0A2K1YDK8
Uncharacterized protein.
      
 0.614
B9GKR8_POPTR
BHLH domain-containing protein.
  
   
 0.492
A0A3N7FW13
BHLH domain-containing protein.
  
     0.477
A0A2K1WPH6
Uncharacterized protein.
  
 0.466
B9HHU1_POPTR
Uncharacterized protein.
  
     0.460
A9PBZ7_POPTR
Uncharacterized protein; Belongs to the cytochrome P450 family.
     
 0.459
B2Z6P4_POPTR
Trans-cinnamate 4-hydroxylase; Belongs to the cytochrome P450 family.
     
 0.455
B2Z6P5_POPTR
Trans-cinnamate 4-hydroxylase; Belongs to the cytochrome P450 family.
     
 0.447
POPTR_T045500
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
    
 0.441
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.