STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K2A5J4Uncharacterized protein. (128 aa)    
Predicted Functional Partners:
A0A3N7EYQ8
Uncharacterized protein.
   
 
 0.896
B9GUG4_POPTR
Uncharacterized protein.
   
 
 0.896
A0A3N7HSV3
RING-type domain-containing protein.
      
 0.564
A9P9H8_POPTR
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
      
 0.562
A0A2K1Y4X4
Trigger_N domain-containing protein.
      
 0.558
U5GEU8_POPTR
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
      
 0.557
B9HGM0_POPTR
PSII_BNR domain-containing protein.
    
 
 0.404
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.