STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K2ALA2Uncharacterized protein; Belongs to the peptidase C1 family. (436 aa)    
Predicted Functional Partners:
A0A2K1YBF9
Uncharacterized protein.
    
  0.911
B9IF98_POPTR
Uncharacterized protein.
    
  0.911
A0A2K1XEJ2
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.894
B9HG22_POPTR
OBG-type G domain-containing protein.
    
   0.894
B9I4W5_POPTR
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.894
B9MZA8_POPTR
Uncharacterized protein.
    
  0.891
B9GKV7_POPTR
OBG-type G domain-containing protein.
    
   0.888
B9GWB7_POPTR
OBG-type G domain-containing protein.
    
   0.888
A0A2K1XVJ4
Citrate synthase.
   
   0.885
A0A2K1Z1L5
Citrate synthase; Belongs to the citrate synthase family.
   
   0.885
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.