STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2K2ATR0ZF-HD dimerization-type domain-containing protein. (334 aa)    
Predicted Functional Partners:
A0A3N7HD75
ZF-HD dimerization-type domain-containing protein.
    
 
0.543
U5FSR8_POPTR
ZF-HD dimerization-type domain-containing protein.
    
 
0.543
B9GS74_POPTR
BHLH family protein.
  
     0.514
U5GGP3_POPTR
BHLH family protein.
  
     0.511
A0A2K1Z8S2
NAC domain-containing protein.
  
     0.507
A0A2K1ZD15
MENTAL domain-containing protein.
  
     0.483
A0A2K2C2J7
Jas domain-containing protein.
  
     0.478
A0A3N7F955
F-box domain-containing protein.
  
     0.477
A9PE20_POPTR
Uncharacterized protein.
  
     0.477
A0A3N7GXW6
Jas domain-containing protein.
  
     0.475
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.