A0A2K2BNA8 protein (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2K2BNA8

Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (1008 aa)

Predicted Functional Partners:

A0A2K1WRA7

0.946

A0A2K1ZVL8

0.941

A0A3N7FWN6

0.941

U5GPI0_POPTR

0.941

A0A2K1YM54

0.861

A9PAG3_POPTR

0.844

B9I9S8_POPTR

0.844

A0A2K2BA13

0.831

A0A2K2BXY0

0.828

A0A3N7F6T1

0.825

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1WRA7	A0A2K1ZVL8	A0A2K1WRA7	A0A2K1ZVL8	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.631
A0A2K1WRA7	A0A2K2BA13	A0A2K1WRA7	A0A2K2BA13	DNA_mis_repair domain-containing protein.	ERCC4 domain-containing protein.	0.599
A0A2K1WRA7	A0A2K2BNA8	A0A2K1WRA7	A0A2K2BNA8	DNA_mis_repair domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.946
A0A2K1WRA7	A0A2K2BXY0	A0A2K1WRA7	A0A2K2BXY0	DNA_mis_repair domain-containing protein.	ERCC4 domain-containing protein.	0.811
A0A2K1WRA7	A0A3N7FWN6	A0A2K1WRA7	A0A3N7FWN6	DNA_mis_repair domain-containing protein.	Tify domain-containing protein.	0.631
A0A2K1WRA7	A9PAG3_POPTR	A0A2K1WRA7	A9PAG3	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.523
A0A2K1WRA7	B9I9S8_POPTR	A0A2K1WRA7	B9I9S8	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.996
A0A2K1WRA7	U5GPI0_POPTR	A0A2K1WRA7	U5GPI0	DNA_mis_repair domain-containing protein.	Tify domain-containing protein.	0.631
A0A2K1YM54	A0A2K1ZVL8	A0A2K1YM54	A0A2K1ZVL8	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A2K1YM54	A0A2K2BA13	A0A2K1YM54	A0A2K2BA13	Uncharacterized protein.	ERCC4 domain-containing protein.	0.839
A0A2K1YM54	A0A2K2BNA8	A0A2K1YM54	A0A2K2BNA8	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.861
A0A2K1YM54	A0A2K2BXY0	A0A2K1YM54	A0A2K2BXY0	Uncharacterized protein.	ERCC4 domain-containing protein.	0.847
A0A2K1YM54	A0A3N7F6T1	A0A2K1YM54	A0A3N7F6T1	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A2K1YM54	A0A3N7FWN6	A0A2K1YM54	A0A3N7FWN6	Uncharacterized protein.	Tify domain-containing protein.	0.990
A0A2K1YM54	A9PAG3_POPTR	A0A2K1YM54	A9PAG3	Uncharacterized protein.	Uncharacterized protein.	0.826
A0A2K1YM54	B9I9S8_POPTR	A0A2K1YM54	B9I9S8	Uncharacterized protein.	Uncharacterized protein.	0.490
A0A2K1YM54	U5GPI0_POPTR	A0A2K1YM54	U5GPI0	Uncharacterized protein.	Tify domain-containing protein.	0.990
A0A2K1ZVL8	A0A2K1WRA7	A0A2K1ZVL8	A0A2K1WRA7	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.631
A0A2K1ZVL8	A0A2K1YM54	A0A2K1ZVL8	A0A2K1YM54	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A2K1ZVL8	A0A2K2BA13	A0A2K1ZVL8	A0A2K2BA13	Uncharacterized protein.	ERCC4 domain-containing protein.	0.828

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About