STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7F146Uncharacterized protein. (93 aa)    
Predicted Functional Partners:
A0A2K2BFU1
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
  
  
 0.627
B9H7A1_POPTR
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
  
  
 0.627
A0A3N7I0P0
Rieske domain-containing protein.
  
  
 0.597
A0A2K2C221
TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.
  
  
 0.566
A0A3N7F227
Chloride channel protein.
      
 0.510
A0A2K1XRH1
TFCD_C domain-containing protein.
     
 0.482
A0A2K1Z2N9
TPR_REGION domain-containing protein.
  
  
 0.472
B9GSX3_POPTR
Uncharacterized protein; Belongs to the P(II) protein family.
  
  
 0.461
A0A2K2CA43
Uncharacterized protein.
   
 
 0.447
B9GVH0_POPTR
Uncharacterized protein.
   
  
 0.436
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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