STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7F362Uncharacterized protein. (334 aa)    
Predicted Functional Partners:
A0A2K1Y8B9
Uncharacterized protein.
     
 0.644
A0A3N7FXP9
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.644
A9PAH4_POPTR
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.644
B9HGM0_POPTR
PSII_BNR domain-containing protein.
     
 0.643
A9PDI1_POPTR
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
     
 0.597
U5FQA6_POPTR
Rhodanese domain-containing protein.
     
 0.597
U5GUS4_POPTR
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
     
 0.597
B9GJS3_POPTR
Uncharacterized protein.
     
 0.596
B9IJU1_POPTR
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
   
 
 0.593
A0A2K1X0S5
Uncharacterized protein; Belongs to the OSBP family.
   
 
  0.588
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.