STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7F5D3Glyco_hydro_18 domain-containing protein. (160 aa)    
Predicted Functional Partners:
B9HFT3_POPTR
Uncharacterized protein.
   
 0.594
A0A2K1ZDP2
Beta-hexosaminidase.
    
 0.555
B9HTN9_POPTR
Beta-hexosaminidase.
    
 0.555
A0A2K1Y5Y6
F-box domain-containing protein.
   
 0.525
A0A2K2BZA7
Uncharacterized protein.
   
 0.525
A0A3N7ES29
Uncharacterized protein.
   
 0.525
A0A3N7FCQ2
Glyco_hydro_20 domain-containing protein.
    
 0.499
A9PBP8_POPTR
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 0.491
B9H706_POPTR
Uncharacterized protein.
   
 0.491
U5GPW9_POPTR
Uncharacterized protein.
   
 0.491
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.