STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7FPI2RING-type domain-containing protein. (892 aa)    
Predicted Functional Partners:
A0A2K2C9L2
INCENP_ARK-bind domain-containing protein.
   
 0.956
A9PFI9_POPTR
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.909
B9HBC9_POPTR
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.909
B9INH4_POPTR
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.909
POPTR_T005700
ATP-synt_ab_N domain-containing protein.
   
 0.807
A0A2K2BM67
Uncharacterized protein.
   
 0.807
A0A3N7FSM4
Uncharacterized protein.
   
 0.807
atpB
ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 0.807
B9HJ80_POPTR
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.807
B9HWA2_POPTR
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.807
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.