STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7FXB8Uncharacterized protein. (631 aa)    
Predicted Functional Partners:
B9HL30_POPTR
Uncharacterized protein.
  
     0.505
B9HVS1_POPTR
C2H2-type domain-containing protein.
  
     0.488
A0A3N7GTI6
Uncharacterized protein.
  
     0.487
B9HID4_POPTR
Myb-like domain-containing protein.
  
     0.483
B9HJJ4_POPTR
C2H2-type domain-containing protein.
  
     0.478
A0A2K1YUX5
Myb-like domain-containing protein.
  
     0.475
B9IAD1_POPTR
BHLH domain-containing protein.
  
     0.468
A0A2K2BN68
BHLH family protein.
  
     0.466
A0A2K1ZS63
Prenylcys_lyase domain-containing protein.
      
 0.465
A0A2K1ZS65
Prenylcys_lyase domain-containing protein.
      
 0.465
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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