STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7G194Uncharacterized protein. (220 aa)    
Predicted Functional Partners:
A0A2K1Z9H6
Uncharacterized protein.
  
 0.818
B9HG88_POPTR
Aminotran_5 domain-containing protein.
  
 0.818
A0A2K1Z3X7
Aminotran_5 domain-containing protein.
  
 0.766
A0A2K1XYP4
Aminotran_5 domain-containing protein.
  
 0.734
B9GT99_POPTR
Aminotran_5 domain-containing protein.
  
 0.734
B9I9B2_POPTR
Aminotran_5 domain-containing protein.
  
 0.734
B9N414_POPTR
Aminotran_5 domain-containing protein.
  
 0.734
A0A2K1ZRM6
Fer2_3 domain-containing protein.
  
 
 0.715
B9GIY4_POPTR
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 
 0.715
B9H376_POPTR
Uncharacterized protein.
  
 
 0.686
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.