STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7G2H9Peptidase_M48 domain-containing protein. (108 aa)    
Predicted Functional Partners:
A0A2K1ZYW0
Uncharacterized protein.
    
 
 0.736
A0A2K1YMS4
Uncharacterized protein.
 
   
 0.626
A0A2K2A6P3
AAA domain-containing protein.
   
 
 0.615
A0A2K2ARF7
Uncharacterized protein.
 
  
 0.615
A0A3N7FU16
AAA domain-containing protein.
   
 
 0.615
A9PAM5_POPTR
Uncharacterized protein.
 
   
 0.615
B9IDY3_POPTR
AAA domain-containing protein.
   
 
 0.615
B9I6Q1_POPTR
AMP_N domain-containing protein.
  
  
 0.608
B9ICU8_POPTR
Peptidase_M3 domain-containing protein.
  
  
 0.569
B9GIX2_POPTR
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
    
 
 0.564
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.