STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T034466Aldo_ket_red domain-containing protein. (109 aa)    
Predicted Functional Partners:
U5GTD5_POPTR
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.655
POPTR_T068932
Aldo_ket_red domain-containing protein.
  
     0.529
A9P9H4_POPTR
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.528
A9PBK5_POPTR
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.528
A9PBN7_POPTR
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.528
A9PFX5_POPTR
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.528
A9PBA3_POPTR
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.491
B9GL77_POPTR
Uncharacterized protein.
    
 0.491
A0A2K1YRQ5
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.485
A0A2K1ZH16
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.485
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.