STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7HF98SAP domain-containing protein. (115 aa)    
Predicted Functional Partners:
A0A2K1XRK6
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 0.991
A0A3N7EIZ1
Ku domain-containing protein.
   
 0.991
A0A2K2AS66
DNA ligase.
   
 0.989
A0A2K2AS68
Uncharacterized protein.
   
 0.989
A0A2K1X0P4
DNA ligase.
   
 0.981
B9GFJ5_POPTR
Zinc-hook domain-containing protein.
   
 0.964
A0A2K1YQH5
Uncharacterized protein.
    
 0.951
B9I791_POPTR
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 
 0.951
A0A3N7HME5
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.947
A0A2K2CBJ4
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.941
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.