STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3N7HRI5Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (999 aa)    
Predicted Functional Partners:
A0A2K1XVJ4
Citrate synthase.
  
 0.997
B9IFM7_POPTR
Citrate synthase.
  
 0.997
B9N6I9_POPTR
Citrate synthase; Belongs to the citrate synthase family.
  
 0.997
A0A2K1X2T1
Isocitrate lyase; Belongs to the isocitrate lyase/PEP mutase superfamily. Isocitrate lyase family.
  
 0.987
B9HHE4_POPTR
Isocitrate lyase; Belongs to the isocitrate lyase/PEP mutase superfamily. Isocitrate lyase family.
  
 0.987
B9GHS2_POPTR
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.980
A0A2K1Z1L5
Citrate synthase; Belongs to the citrate synthase family.
  
 0.979
B9HI15_POPTR
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.976
B9HYD8_POPTR
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.976
POPTR_T059000
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.973
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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