STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A9P8R5_POPTRF-box domain-containing protein. (384 aa)    
Predicted Functional Partners:
U5GCW9_POPTR
Uncharacterized protein.
  
     0.535
B9MZG4_POPTR
Uncharacterized protein.
  
     0.490
U7E150_POPTR
Uncharacterized protein.
  
     0.490
A0A3N7F0B7
Uncharacterized protein.
  
     0.466
A0A2K2CD70
PGG domain-containing protein.
  
 
  0.460
POPTR_T087800
PGG domain-containing protein.
  
 
  0.456
A9P889_POPTR
RING-type domain-containing protein.
  
     0.453
A0A3N7GA92
Uncharacterized protein.
  
  
  0.452
B9HBJ3_POPTR
Uncharacterized protein.
  
 
  0.447
B9HU55_POPTR
RING-type domain-containing protein.
  
     0.438
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.