STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A9PA10_POPTR60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (178 aa)    
Predicted Functional Partners:
A9PBE6_POPTR
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 0.992
A9PC42_POPTR
Uncharacterized protein.
   
 0.986
A9PC55_POPTR
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 
 0.983
A9P9H8_POPTR
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.980
A9PF35_POPTR
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.971
B9HHM2_POPTR
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.971
A0A2K2AX22
Ubiquitin-like domain-containing protein.
   
 0.967
A9PC21_POPTR
Ubiquitin-like domain-containing protein.
   
 0.967
A9P9M3_POPTR
Ribosomal_L6e_N domain-containing protein.
   
 0.963
B9GFS1_POPTR
Ribosomal_L6e_N domain-containing protein.
   
 0.963
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.