STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9GEM6_POPTRUncharacterized protein. (243 aa)    
Predicted Functional Partners:
A0A2K2BYG3
Uncharacterized protein.
  
   
 0.708
B9GQJ0_POPTR
cobW domain-containing protein.
  
   
 0.688
U5GMA7_POPTR
cobW domain-containing protein.
  
   
 0.688
B9HL90_POPTR
Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
  
   
 0.686
A0A2K1YNT4
Uncharacterized protein.
    
 0.570
U5GT82_POPTR
Uncharacterized protein.
    
 0.569
A0A2K1WPF6
Uncharacterized protein.
      
 0.558
A0A2K2BCA3
TP_methylase domain-containing protein.
      
 0.558
A0A2K2BXB7
TPR_REGION domain-containing protein.
      
 0.558
B9GVI8_POPTR
DUF862 domain-containing protein.
      
 0.557
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.