STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9GEY3_POPTRPMEI domain-containing protein; In the C-terminal section; belongs to the pectinesterase family. (558 aa)    
Predicted Functional Partners:
A0A2K1ZAY5
Pectate lyase.
  
 
  0.736
A0A2K1ZBZ3
Pectate lyase.
  
 
  0.734
B9HUL2_POPTR
Pectate lyase.
  
 
  0.734
B9IIV9_POPTR
Pectate lyase.
  
 
  0.734
A0A2K2A5T4
Pectate lyase.
  
 
  0.733
A0A2K2A103
Pectate lyase.
  
 
  0.726
B9H0D8_POPTR
Pectate lyase.
  
 
  0.726
B9IJT5_POPTR
Pectate lyase.
  
 
  0.726
A0A2K2C9J6
Pectate lyase.
  
  
  0.718
B9HJT8_POPTR
Pectate lyase.
  
 
  0.716
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.