STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9GJB5_POPTRAa_trans domain-containing protein. (448 aa)    
Predicted Functional Partners:
A0A2K1Z258
RING-type domain-containing protein.
     
 0.718
B9HTG7_POPTR
RING-type domain-containing protein.
     
 0.718
B9H3K1_POPTR
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
 0.711
B9IJT3_POPTR
PHB domain-containing protein.
      
 0.693
B9HV73_POPTR
MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 
 0.681
A0A2K1WQL9
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.610
A0A2K1WQR2
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.603
A0A2K1Y2A8
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.603
A0A2K1ZKL3
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.603
A9PGW7_POPTR
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.603
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.