STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9GT79_POPTRUncharacterized protein. (188 aa)    
Predicted Functional Partners:
A0A2K1ZZ79
Uncharacterized protein.
   
  
 0.611
B9H1Q6_POPTR
NmrA domain-containing protein.
   
  
 0.575
U5G4C0_POPTR
NmrA domain-containing protein.
   
  
 0.575
POPTR_T099400
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
   
 0.548
B9HGM0_POPTR
PSII_BNR domain-containing protein.
      
 0.526
A0A2K1XIV0
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
   
 0.521
A9PH90_POPTR
Uncharacterized protein.
  
   
 0.504
A9PIG1_POPTR
Uncharacterized protein.
   
  
 0.498
A0A2K1ZLU4
Uncharacterized protein.
   
  
 0.494
A9PHQ9_POPTR
Uncharacterized protein.
   
  
 0.494
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.