STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9H672_POPTRHMG box domain-containing protein. (144 aa)    
Predicted Functional Partners:
A0A2K1YXB5
Uncharacterized protein; Belongs to the actin family.
    
 0.830
A0A2K1YQC9
Uncharacterized protein; Belongs to the actin family.
    
 0.773
A0A2K1ZID6
Uncharacterized protein; Belongs to the actin family.
    
 0.773
B9N7M5_POPTR
General transcription factor IIH subunit.
    
 0.757
B9N1A8_POPTR
Uncharacterized protein.
    
 0.739
B9GSP7_POPTR
Helicase ATP-binding domain-containing protein.
    
 0.734
A0A2K1XIB9
Uncharacterized protein; Belongs to the actin family.
   
 0.724
A0A2K1Y9P6
Uncharacterized protein; Belongs to the actin family.
   
 0.724
B9H2W7_POPTR
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.719
A0A3N7G7Y6
Uncharacterized protein.
    
 0.673
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.