STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9HBX6_POPTRNAC domain-containing protein. (268 aa)    
Predicted Functional Partners:
A0A3N7G7Z1
Malectin_like domain-containing protein.
  
     0.531
B9GJG2_POPTR
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.514
A0A2K1YHQ5
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.513
B9HEL6_POPTR
BTB domain-containing protein.
  
     0.510
B9H698_POPTR
Uncharacterized protein.
  
     0.507
B9I8L2_POPTR
Uncharacterized protein.
  
     0.505
A0A2K1ZSW3
MADS-box domain-containing protein.
  
     0.499
U5G4N7_POPTR
ANF_receptor domain-containing protein.
  
     0.498
B9HT63_POPTR
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.489
B9I2Q7_POPTR
Uncharacterized protein.
  
     0.489
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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