STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_T107800Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
B9GFJ5_POPTR
Zinc-hook domain-containing protein.
    
 0.554
B9H0Q0_POPTR
WD_REPEATS_REGION domain-containing protein.
    
  0.518
B9HRN9_POPTR
WD_REPEATS_REGION domain-containing protein.
    
  0.518
A0A2K2AX22
Ubiquitin-like domain-containing protein.
    
  0.508
A9PC21_POPTR
Ubiquitin-like domain-containing protein.
    
  0.508
A0A2K1XEK6
Uncharacterized protein.
  
     0.506
B9GPE6_POPTR
Uncharacterized protein; Belongs to the arginase family.
   
 
 0.502
B9IBY0_POPTR
Uncharacterized protein; Belongs to the arginase family.
   
 
 0.502
A0A2K2C8B2
Uncharacterized protein.
  
     0.493
B9GWG8_POPTR
Uncharacterized protein.
  
     0.489
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (16%) [HD]