STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9HNE5_POPTRUncharacterized protein. (110 aa)    
Predicted Functional Partners:
A0A2K1XCD7
Small nuclear ribonucleoprotein G.
   
 0.990
A9PB05_POPTR
Small nuclear ribonucleoprotein G.
   
 0.990
A0A2K2C7J0
Sm domain-containing protein.
   
 0.988
A9PB49_POPTR
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.988
A9PBX5_POPTR
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.982
A9PDM1_POPTR
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.982
B9GG60_POPTR
RRM domain-containing protein.
   
 0.981
B9HNI9_POPTR
RRM domain-containing protein.
   
 0.981
A0A2K2C6G4
TOG domain-containing protein.
   
 0.976
B9IJD5_POPTR
TOG domain-containing protein.
   
 0.976
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.