STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9HS98_POPTRLEC14B homolog; Belongs to the WD repeat LEC14B family. (474 aa)    
Predicted Functional Partners:
A0A3N7G6J8
Uncharacterized protein.
  
 
  0.687
A0A2K1Z7M0
Uncharacterized protein.
  
 
  0.675
B9GKD0_POPTR
DDA1 domain-containing protein.
    
  0.615
A0A2K2AHD8
Uncharacterized protein.
    
  0.600
A0A3N7EI45
Uncharacterized protein.
    
  0.600
A0A3N7EPS9
WD_REPEATS_REGION domain-containing protein.
    
  0.600
A0A2K1XNW7
Uncharacterized protein.
     
  0.599
A0A2K1YEY5
Uncharacterized protein.
    
  0.580
A0A3N7FXW5
Uncharacterized protein.
    
  0.580
B9GG30_POPTR
Uncharacterized protein.
    
  0.580
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.