STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9HUL2_POPTRPectate lyase. (496 aa)    
Predicted Functional Partners:
B9N8S1_POPTR
Uncharacterized protein.
     
 0.756
B9N8S3_POPTR
Uncharacterized protein.
     
 0.756
A0A2K1YCF7
Uncharacterized protein.
     
 0.752
A0A2K1WX21
Pectinesterase.
  
 
 0.751
A0A2K1ZML3
Pectinesterase.
  
 
 0.750
A0A2K1XB57
Uncharacterized protein.
     
 0.748
A0A2K1Z3L0
Uncharacterized protein.
     
 0.748
A0A2K1ZUB9
Uncharacterized protein.
     
 0.748
A0A3N7HS43
Uncharacterized protein.
     
 0.748
B9H9W1_POPTR
Uncharacterized protein.
     
 0.748
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.