STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9I395_POPTRUncharacterized protein. (749 aa)    
Predicted Functional Partners:
B9I2V4_POPTR
Uncharacterized protein.
    
 0.754
A0A3N7FFW3
APC1_C domain-containing protein.
    
 0.748
A0A2K2APC8
WD_REPEATS_REGION domain-containing protein.
    
 0.746
A0A3N7HSV3
RING-type domain-containing protein.
    
 0.735
B9HUU3_POPTR
Uncharacterized protein.
    
 0.660
B9NBP0_POPTR
CDC73_C domain-containing protein.
    
 0.660
B9HF19_POPTR
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.655
B9MXN0_POPTR
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.655
A0A2K2B1P0
Uncharacterized protein.
    
 0.651
A0A2K2C061
Uncharacterized protein.
    
 0.651
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.