STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9I4B4_POPTRUncharacterized protein. (191 aa)    
Predicted Functional Partners:
A0A2K1ZK56
Uncharacterized protein.
   
 0.535
A0A2K2BU46
DUF5311 domain-containing protein.
  
 
 0.534
U5GCT0_POPTR
Uncharacterized protein.
  
     0.514
U5G2F1_POPTR
Uncharacterized protein.
  
     0.513
U5GU17_POPTR
Uncharacterized protein.
      
 0.512
A0A3N7FR97
Uncharacterized protein.
  
     0.510
U5GTD5_POPTR
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.499
A0A3N7FP51
Uncharacterized protein.
  
     0.480
A0A2K2A0P6
Uncharacterized protein.
  
     0.475
A0A2K1WMV2
Protein kinase domain-containing protein.
    
 0.470
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.