STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9IA32_POPTRXyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (293 aa)    
Predicted Functional Partners:
A0A2K2C8V4
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.692
B9I120_POPTR
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.692
A0A2K1YXD4
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.614
B9HGM0_POPTR
PSII_BNR domain-containing protein.
    
 0.601
A9PCL0_POPTR
Uncharacterized protein.
    
 
 0.581
A9PFI4_POPTR
Uncharacterized protein.
    
 
 0.581
B9HPU3_POPTR
Uncharacterized protein.
    
 
 0.581
B9N808_POPTR
Uncharacterized protein.
    
 
 0.581
A0A2K1ZQ38
Uncharacterized protein.
   
 
 0.479
A0A3N7EII1
Uncharacterized protein.
   
 
 0.479
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.