STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
B9IBX3_POPTRGolgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (243 aa)    
Predicted Functional Partners:
A9PF99_POPTR
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.993
A9PAX2_POPTR
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.990
B9HAR1_POPTR
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.990
A0A2K1YWP3
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.984
A0A2K1WXA1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.982
A0A2K2A337
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.982
A9P7V8_POPTR
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.982
B9GIJ5_POPTR
Uncharacterized protein.
    
 0.965
A0A2K1YQD6
t-SNARE coiled-coil homology domain-containing protein.
    
 0.933
A0A3N7G1Y3
t-SNARE coiled-coil homology domain-containing protein.
    
 0.933
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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