STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9IFT1_POPTRRuvB-like helicase; Belongs to the RuvB family. (467 aa)    
Predicted Functional Partners:
A0A2K2AX87
RuvB-like helicase.
  
0.995
A0A3N7H064
RuvB-like helicase; Belongs to the RuvB family.
  
0.995
U5GGJ9_POPTR
RuvB-like helicase; Belongs to the RuvB family.
  
0.995
A0A2K1XU60
SANT domain-containing protein.
   
 0.990
A0A2K1XIB9
Uncharacterized protein; Belongs to the actin family.
   
 0.988
A0A2K1Y9P6
Uncharacterized protein; Belongs to the actin family.
   
 0.988
U5GWR4_POPTR
YL1_C domain-containing protein.
    
 0.979
A0A2K1YXB5
Uncharacterized protein; Belongs to the actin family.
    
 0.976
B9I6K9_POPTR
HIT-type domain-containing protein.
    
 0.976
A0A2K2AFB2
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.973
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.