B9INB4_POPTR protein (Populus trichocarpa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B9INB4_POPTR

RBR-type E3 ubiquitin transferase. (189 aa)

Predicted Functional Partners:

A0A2K2AX22

0.570

A9PC21_POPTR

0.570

B9GZJ5_POPTR

0.511

B9I564_POPTR

0.440

B9IDW8_POPTR

0.440

A0A2K1YC75

0.423

A0A3N7ELV5

0.423

A9P863_POPTR

0.423

A9P8M2_POPTR

0.423

U5FKY2_POPTR

0.423

Your Current Organism:

Populus trichocarpa

NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K1YC75	A0A2K2AX22	A0A2K1YC75	A0A2K2AX22	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K1YC75	A9PC21_POPTR	A0A2K1YC75	A9PC21	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K1YC75	B9INB4_POPTR	A0A2K1YC75	B9INB4	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.423
A0A2K2AX22	A0A2K1YC75	A0A2K2AX22	A0A2K1YC75	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K2AX22	A0A3N7ELV5	A0A2K2AX22	A0A3N7ELV5	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K2AX22	A9P863_POPTR	A0A2K2AX22	A9P863	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K2AX22	A9P8M2_POPTR	A0A2K2AX22	A9P8M2	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A2K2AX22	A9PC21_POPTR	A0A2K2AX22	A9PC21	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.901
A0A2K2AX22	B9INB4_POPTR	A0A2K2AX22	B9INB4	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.570
A0A2K2AX22	U5FKY2_POPTR	A0A2K2AX22	U5FKY2	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.976
A0A3N7ELV5	A0A2K2AX22	A0A3N7ELV5	A0A2K2AX22	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A3N7ELV5	A9PC21_POPTR	A0A3N7ELV5	A9PC21	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A0A3N7ELV5	B9INB4_POPTR	A0A3N7ELV5	B9INB4	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.423
A9P863_POPTR	A0A2K2AX22	A9P863	A0A2K2AX22	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A9P863_POPTR	A9PC21_POPTR	A9P863	A9PC21	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A9P863_POPTR	B9INB4_POPTR	A9P863	B9INB4	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.423
A9P8M2_POPTR	A0A2K2AX22	A9P8M2	A0A2K2AX22	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A9P8M2_POPTR	A9PC21_POPTR	A9P8M2	A9PC21	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975
A9P8M2_POPTR	B9INB4_POPTR	A9P8M2	B9INB4	Ubiquitin-like domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.423
A9PC21_POPTR	A0A2K1YC75	A9PC21	A0A2K1YC75	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.975

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About