STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9MSX7_POPTRElf4 domain-containing protein. (114 aa)    
Predicted Functional Partners:
A0A3N7G2Q2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.931
B9HC23_POPTR
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.931
A0A3N7HU25
Thiolase_C domain-containing protein.
  
 0.927
B9GMG4_POPTR
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.927
B9GTE4_POPTR
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.927
U5GSR3_POPTR
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.927
U7E0K7_POPTR
PEROXISOME DEFECTIVE 1 family protein.
  
 0.927
A0A2K2B3E2
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.790
U5GTV8_POPTR
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.790
A0A2K1XEF6
Uncharacterized protein.
  
 0.785
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.