STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9MXK1_POPTRUncharacterized protein. (344 aa)    
Predicted Functional Partners:
A0A2K1YHY1
TCP domain-containing protein.
  
 
 
 0.551
A0A2K2CA04
TCP domain-containing protein.
  
 
 
 0.531
B9GPT7_POPTR
TCP domain-containing protein.
  
 
   0.500
B9IC90_POPTR
TCP domain-containing protein.
  
 
   0.497
A9PAG3_POPTR
Uncharacterized protein.
  
     0.473
A0A2K1YGU5
Uncharacterized protein.
  
     0.472
B9I8N3_POPTR
Malectin_like domain-containing protein.
  
     0.461
A0A2K2AJE6
NAC domain-containing protein.
  
     0.454
B9HPS8_POPTR
Uncharacterized protein.
  
     0.453
A9PE61_POPTR
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
   
 0.451
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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