STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9MYJ5_POPTRUncharacterized protein. (707 aa)    
Predicted Functional Partners:
A0A2K2A0U5
Uncharacterized protein.
  
  
 0.650
B9HG53_POPTR
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.617
B9IE75_POPTR
Geranyl diphosphate synthase small subunit; Belongs to the FPP/GGPP synthase family.
      
 0.617
B9HR16_POPTR
Geranyl diphosphate synthase small subunit; Belongs to the FPP/GGPP synthase family.
      
 0.614
A0A2K2B9U7
OMPdecase domain-containing protein.
  
  
 0.602
A0A2K2BRD9
OMPdecase domain-containing protein.
  
  
 0.602
B9HHD3_POPTR
Uncharacterized protein.
  
  
 0.574
B9IAD7_POPTR
Uncharacterized protein.
  
  
 0.574
B9MXZ3_POPTR
Uncharacterized protein.
  
  
 0.574
A0A2K1ZX35
Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.556
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.