STRINGSTRING
POPTR_0019s05950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0019s05950.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0019s05950.1Predicted protein (275 aa)    
Predicted Functional Partners:
POPTR_0003s09830.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGT2_POPTR] (405 aa)
     
        0.596
POPTR_0003s20890.1
Predicted protein (344 aa)
     
   
0.590
POPTR_0013s00760.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGZ8_POPTR] (380 aa)
     
        0.567
POPTR_0016s11610.1
Predicted protein (414 aa)
     
        0.546
POPTR_0016s14310.1
Predicted protein (383 aa)
     
        0.545
POPTR_0014s13660.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI59_POPTR] (404 aa)
     
        0.526
POPTR_0005s27550.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG13_POPTR] (452 aa)
     
        0.525
POPTR_0001s01630.1
Predicted protein (405 aa)
     
        0.514
POPTR_0013s02740.1
Predicted protein (292 aa)
     
        0.513
POPTR_0001s30840.1
Putative uncharacterized proteinStress enhanced protein 1 [source-UniProtKB/TrEMBL;Acc-A9PFE3_POPTR] (145 aa)
     
        0.510
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%) [HD]